ProbeAlign

ProbeAlign is a program for annotating ncRNA structures by incorporating high-throughput sequencing based structure probing information.

An Example Output of ProbeAlign

	*ProbeAlign_Mark	32344,32429	110.921	6.72681e-11
	<<<<<<<..<<<<..--.....>-->>>.<<<<<.......>>>>>...-----------.<<<<<.......>>>>>>>>>>>>. 
	GgggaugUAGCUuAG--UGGUAa--AGCauugGaCUuauAAuCcgaagg-----------CGugGGUUCgAaUCCcguuaucccCA 
	(((((((| ((( |   |||||   ))) (((((||   ||))))) |            |(((((||| | |))))))))))))| 
	GGAGGGAUUUCCAAUGUUGGUAAUUGGAGUUGAGCUGUAAACUCAAUGAUUAUAUAUCUUCAUAGGUUCAAUUCCUAUUCCCUUCA
	10010000101000111001111100011010001111010000000111111110111111000011110110000000010001
	

Benchmark Dataset

Preprocessing of FragSeq Data

Scan Results for FragSeq Data

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Please contact Shaojie Zhang if you have any suggestions.