RNAConSLOpt

RNAConSLOpt is a program for predicting consensus stable local optimal structures (represented by stack configurations) for aligned RNA sequences. RNAConSLOpt can be used to predict consensus alternate structures for riboswitches.

PLATFORM

Fedora 14

COMPILER

GCC 4.5.1

INSTALLATION

make

DESCRIPTION

USAGE: RNAConSLOpt -i [infile] -o [outfile] -d delta -p percent -t barrier -c [configfile]

EXAMPLE

BENCHMARKS

RIBOSWITCH PREDICTIONS

DOWNLOAD

CONTACT US

Please contact Shaojie Zhang if you have any suggestions.