Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 18.000


Aligning:
Query:	4IOA_X:1797-1803
Target:	1VX6_A:2129-2135

iso	.*.*...
edge	.s.h...
struc	.(.)...

iso	.*...*.
edge	.s...h.
struc	.(...).

	CGAACAG
	 *|*|*|
	UUAACAG

struc	.(...).
edge	.s...h.
iso	.*...*.

struc	.(.)...
edge	.s.h...
iso	.*.*...



Alignment Score: 19.400


Aligning:
Query:	4IOA_X:1797-1803
Target:	3U5H_5:1862-1868

iso	.*.*...
edge	.s.h...
struc	.(.)...

iso	.*...*.
edge	.s...h.
struc	.(...).

	CGAACAG
	 *|*|*|
	UGAACAG

struc	.(...).
edge	.s...h.
iso	.*...*.

struc	.(.)...
edge	.s.h...
iso	.*.*...



Alignment Score: 17.400


Aligning:
Query:	4IOA_X:1797-1803
Target:	3D0U_A:121-127

iso	.*.*...
edge	.s.h...
struc	.(.)...

iso	.*...*.
edge	.s...h.
struc	.(...).

	CGAACAG
	 *|* * 
	GGAAUAC

struc	.(...).
edge	.s...h.
iso	.*...*.

struc	.(.)...
edge	.s.h...
iso	.*.*...



Alignment Score: 16.600


Aligning:
Query:	4IOA_X:1797-1803
Target:	2XLI_B:10-16

iso	.*.*...
edge	.s.h...
struc	.(.)...

iso	.*...*.
edge	.s...h.
struc	.(...).

	CGAACAG
	|* * *|
	CGUAUAG

struc	.(...).
edge	.s...h.
iso	.*...*.

struc	.(.)...
edge	.s.h...
iso	.*.*...



Alignment Score: 15.000


Aligning:
Query:	4IOA_X:1797-1803
Target:	3DIR_A:124-130

iso	.*.*...
edge	.s.h...
struc	.(.)...

iso	.*...*.
edge	.s...h.
struc	.(...).

	CGAACAG
	 *|* * 
	GGAAUAC

struc	.(...).
edge	.s...h.
iso	.*...*.

struc	.(.)...
edge	.s.h...
iso	.*.*...



Alignment Score: 16.000


Aligning:
Query:	4IOA_X:1797-1803
Target:	4BPP_A:1330-1336

iso	.*.*...
edge	.s.h...
struc	.(.)...

iso	.*...*.
edge	.s...h.
struc	.(...).

	CGAACAG
	 *|* * 
	UAAAUAA

struc	.(...).
edge	.s...h.
iso	.*...*.

struc	.(.)...
edge	.s.h...
iso	.*.*...



Alignment Score: 16.200


Aligning:
Query:	4IOA_X:1797-1803
Target:	4QCN_A:666-672

iso	.*.*...
edge	.s.h...
struc	.(.)...

iso	.+...+.
edge	.s...h.
struc	.(...).

	CGAACAG
	|+|+|+|
	CGAACAG

struc	.(...).
edge	.s...w.
iso	.+...+.

struc	.(.)...
edge	.s.h...
iso	.*.*...



Alignment Score: 13.400


Aligning:
Query:	4IOA_X:1797-1803
Target:	4AL7_B:10-16

iso	.+.+...
edge	.s.h...
struc	.(.)...

iso	.*...*.
edge	.s...h.
struc	.(...).

	CGAACAG
	|+ + +|
	CGUAUAG

struc	.(...).
edge	.s...h.
iso	.*...*.

struc	.(.)...
edge	.s.w...
iso	.+.+...



Alignment Score: 16.600


Aligning:
Query:	4IOA_X:1797-1803
Target:	4AL5_B:10-16

iso	.*.*...
edge	.s.h...
struc	.(.)...

iso	.*...*.
edge	.s...h.
struc	.(...).

	CGAACAG
	|* * *|
	CGUAUAG

struc	.(...).
edge	.s...h.
iso	.*...*.

struc	.(.)...
edge	.s.h...
iso	.*.*...