Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 15.600


Aligning:
Query:	1VW3_A:1684-1694
Target:	4A1B_1:2131-2141

iso	.*+....+*..
edge	.ww....hh..
struc	.((....))..

	UUUACUAAAAA
	|*+| ||+*||
	UUUAAUAAAAA

struc	.((....))..
edge	.wh....hh..
iso	.*+....+*..



Alignment Score: 18.800


Aligning:
Query:	1VW3_A:1684-1694
Target:	4QCN_A:1808-1818

iso	.**....**..
edge	.ww....hh..
struc	.((....))..

	UUUACUAAAAA
	|**|| |**||
	UUUACCAAAAA

struc	.((....))..
edge	.ww....hh..
iso	.**....**..



Alignment Score: 14.400


Aligning:
Query:	1VW3_A:1684-1694
Target:	4IOA_X:1768-1778

iso	.*+....+*..
edge	.ww....hh..
struc	.((....))..

	UUUACUAAAAA
	|*+|| |+*| 
	UUUACCAAAAU

struc	.((....))..
edge	.wh....hh..
iso	.*+....+*..



Alignment Score: 18.800


Aligning:
Query:	1VW3_A:1684-1694
Target:	3J7Y_A:2497-2507

iso	.**....**..
edge	.ww....hh..
struc	.((....))..

	UUUACUAAAAA
	|**|| |**||
	UUUACCAAAAA

struc	.((....))..
edge	.ww....hh..
iso	.**....**..



Alignment Score: 15.600


Aligning:
Query:	1VW3_A:1684-1694
Target:	2QBG_B:1777-1787

iso	.*+....+*..
edge	.ww....hh..
struc	.((....))..

	UUUACUAAAAA
	|*+| ||+*||
	UUUAUUAAAAA

struc	.((....))..
edge	.wh....hh..
iso	.*+....+*..



Alignment Score: 17.400


Aligning:
Query:	1VW3_A:1684-1694
Target:	1VX6_A:2428-2438

iso	.**....**..
edge	.ww....hh..
struc	.((....))..

	UUUACUAAAAA
	|**| | **||
	UUUAAUUAAAA

struc	.((....))..
edge	.ww....hh..
iso	.**....**..



Alignment Score: 12.800


Aligning:
Query:	1VW3_A:1684-1694
Target:	1S72_0:1833-1843

iso	.*+....+*..
edge	.ww....hh..
struc	.((....))..

	UUUACUAAAAA
	|*+| ||+*||
	UCUAGUAACAA

struc	.((....))..
edge	.wh....hh..
iso	.*+....+*..



Alignment Score: 12.800


Aligning:
Query:	1VW3_A:1684-1694
Target:	3U5H_5:2135-2145

iso	.+*....*+..
edge	.ww....hh..
struc	.((....))..

	UUUACUAAAAA
	|+*| | *+||
	UCUAAUUAAAA

struc	.((....))..
edge	.ww....hh..
iso	.+*....*+..