Alignment represention: -> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair. -> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs. -> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage. -> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence. --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Alignment Score: 17.400 Aligning: Query: 4BW0_A:9-14 Target: 4IOA_X:1856-1861 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG * **| UGCAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 3D0U_A:142-147 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 16.800 Aligning: Query: 4BW0_A:9-14 Target: 1S72_0:1054-1060 iso .*.*... edge .s.h... struc .(.)... iso .*..*.. edge .s..h.. struc .(..).. CGAAAG- * **| GGUAAGC struc .(..).. edge .s..h.. iso .*..*.. struc .(.)... edge .s.h... iso .*.*... Alignment Score: 17.400 Aligning: Query: 4BW0_A:9-14 Target: 1VW3_A:2641-2646 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |* **| CGUAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 17.400 Aligning: Query: 4BW0_A:9-14 Target: 1FJG_A:379-384 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |* **| CGCAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 3P22_G:17-22 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 1GID_A:149-154 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** GGAAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 17.600 Aligning: Query: 4BW0_A:9-14 Target: 3Q1Q_B:134-141 iso ..*.*... edge ..s.h... struc ..(.)... iso ..*..*.. edge ..s..h.. struc ..(..).. C-GAAAG- *|** GGGAAACU struc ..(..).. edge ..s..h.. iso ..*..*.. struc ..(.)... edge ..s.h... iso ..*.*... Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 1MFQ_A:197-202 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** GGAAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 3J7A_A:1185-1190 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** AGAAAU struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 16.000 Aligning: Query: 4BW0_A:9-14 Target: 2AW7_A:862-867 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CUAACG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 1GID_B:149-154 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** GGAAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 16.800 Aligning: Query: 4BW0_A:9-14 Target: 4IOA_X:2831-2836 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG * ** AGCAAU struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 4K50_F:587-592 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|**| UGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 17.400 Aligning: Query: 4BW0_A:9-14 Target: 1VW3_A:393-398 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |* **| CGUAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 17.400 Aligning: Query: 4BW0_A:9-14 Target: 2EZ6_C:11-16 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |* **| CGCAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 4FRG_B:46-51 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 2PXV_B:153-158 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 17.600 Aligning: Query: 4BW0_A:9-14 Target: 2IL9_M:6118-6124 iso ..*.*... edge ..s.h... struc ..(.)... iso ..*..*.. edge ..s..h.. struc ..(..).. -CGAAAG- |*|**| GCGAAAGC struc ..(..).. edge ..s..h.. iso ..*..*.. struc ..(.)... edge ..s.h... iso ..*.*... Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 3SUX_X:65-70 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 4TZZ_E:71-76 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 4ENB_A:28-33 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** UGAAAA struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 2QBG_B:2374-2379 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 1VX6_A:3083-3088 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|**| UGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 3U5H_5:382-387 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** UGAAAA struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 4P8Z_A:157-162 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 3U5H_5:2744-2749 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|**| UGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 3GX5_A:73-78 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** GGAAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 4QK8_A:13-18 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 17.400 Aligning: Query: 4BW0_A:9-14 Target: 1FJG_A:897-902 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |* **| CGCAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 1KXK_A:33-38 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|**| UGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 4QCN_A:654-659 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** GGAAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 3U5F_6:1084-1089 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** AGAAAU struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 14.800 Aligning: Query: 4BW0_A:9-14 Target: 4V19_A:534-541 iso ..*.*... edge ..s.h... struc ..(.)... iso ..*..*.. edge ..s..h.. struc ..(..).. C-GAAA-G | * ** | CGUUAAAG struc ..(..).. edge ..s..h.. iso ..*..*.. struc ..(.)... edge ..s.h... iso ..*.*... Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 3NKB_B:49-54 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 16.800 Aligning: Query: 4BW0_A:9-14 Target: 1VX6_A:1254-1260 iso .*.*... edge .s.h... struc .(.)... iso .*..*.. edge .s..h.. struc .(..).. CGAAAG- * **| GGUAAGC struc .(..).. edge .s..h.. iso .*..*.. struc .(.)... edge .s.h... iso .*.*... Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 3U5H_5:844-849 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** GGAAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 3U5H_5:707-712 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|**| UGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 4GMA_Z:119-124 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 17.400 Aligning: Query: 4BW0_A:9-14 Target: 4QCN_A:1895-1900 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG * **| UGCAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 3MOJ_A:2529-2534 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** GGAAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 3P22_E:17-22 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 4FAW_A:274-279 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** GGAAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 4K50_B:587-592 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|**| UGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 1RLG_D:9-14 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 17.600 Aligning: Query: 4BW0_A:9-14 Target: 2IL9_A:6109-6131 iso ...........*.*.......... edge ...........s.h.......... struc ...........(.).......... iso ...........*..*......... edge ...........s..h......... struc ...........(..)......... ----------CGAAAG-------- |*|**| UGGACCGGAGCGAAAGCUCCAAUA struc ...........(..)......... edge ...........s..h......... iso ...........*..*......... struc ...........(.).......... edge ...........s.h.......... iso ...........*.*.......... Alignment Score: 15.600 Aligning: Query: 4BW0_A:9-14 Target: 4QLM_A:54-59 iso .+.+.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |+|++| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.w.. iso .+.+.. Alignment Score: 16.800 Aligning: Query: 4BW0_A:9-14 Target: 4AOB_A:49-54 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** AAAAAU struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 17.400 Aligning: Query: 4BW0_A:9-14 Target: 4QCN_A:1837-1842 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |* **| CGUAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 16.200 Aligning: Query: 4BW0_A:9-14 Target: 4QCN_A:1000-1007 iso .*..*... edge .s..h... struc .(..)... iso .*...*.. edge .s...h.. struc .(...).. CGA-AA-G |*| ** | CGAUAACG struc .(...).. edge .s...h.. iso .*...*.. struc .(..)... edge .s..h... iso .*..*... Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 2OIU_Q:10-15 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 4BPP_A:1056-1061 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** AGAAAU struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 16.200 Aligning: Query: 4BW0_A:9-14 Target: 1S72_0:2873-2884 iso ....*.*..... edge ....s.h..... struc ....(.)..... iso ....*..*.... edge ....s..h.... struc ....(..).... C---GAAA---G | * ** | CGAGGUAACGAG struc ....(..).... edge ....s..h.... iso ....*..*.... struc ....(.)..... edge ....s.h..... iso ....*.*..... Alignment Score: 17.400 Aligning: Query: 4BW0_A:9-14 Target: 2AW7_A:379-384 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |* **| CGCAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 1VX6_A:1693-1698 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** UGAAAA struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 16.000 Aligning: Query: 4BW0_A:9-14 Target: 1FJG_A:862-867 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CUAACG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 16.800 Aligning: Query: 4BW0_A:9-14 Target: 1FJG_A:1265-1270 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG * ** GGCAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 16.800 Aligning: Query: 4BW0_A:9-14 Target: 1S72_0:1793-1799 iso .*.*... edge .s.h... struc .(.)... iso .*..*.. edge .s..h.. struc .(..).. CGAAA-G |* ** | CGGAACG struc .(..).. edge .s..h.. iso .*..*.. struc .(.)... edge .s.h... iso .*.*... Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 3U5H_5:2164-2170 iso .*.*... edge .s.h... struc .(.)... iso .*..*.. edge .s..h.. struc .(..).. CGAAAG- *|**| AGAAAGU struc .(..).. edge .s..h.. iso .*..*.. struc .(.)... edge .s.h... iso .*.*... Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 1HMH_C:104-114 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 16.800 Aligning: Query: 4BW0_A:9-14 Target: 1VX6_A:1783-1788 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG * ** GGUAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 4JF2_A:8-13 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 16.000 Aligning: Query: 4BW0_A:9-14 Target: 4P8Z_A:99-104 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CUAACG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 14.600 Aligning: Query: 4BW0_A:9-14 Target: 1S72_0:252-257 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |* **| CUCACG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 16.000 Aligning: Query: 4BW0_A:9-14 Target: 4P9R_A:317-322 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CUAACG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 2OIU_P:10-15 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 4PLX_B:24-29 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 4K27_U:26-31 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|**| UGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 3NVI_E:9-14 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 4IOA_X:2353-2358 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** GGAAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 1S72_0:690-695 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** GGAAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 16.800 Aligning: Query: 4BW0_A:9-14 Target: 3U5H_5:1126-1132 iso .*.*... edge .s.h... struc .(.)... iso .*..*.. edge .s..h.. struc .(..).. CGAAAG- * **| GGUAAGC struc .(..).. edge .s..h.. iso .*..*.. struc .(.)... edge .s.h... iso .*.*... Alignment Score: 16.800 Aligning: Query: 4BW0_A:9-14 Target: 4WFL_A:81-86 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG * ** GGUAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 4B5R_A:73-78 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** GGAAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 4PLX_A:24-29 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 17.400 Aligning: Query: 4BW0_A:9-14 Target: 3J7A_A:1222-1227 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |* **| CGCAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 4AOB_A:73-78 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** GGAAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 4PCJ_A:16-21 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|**| UGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.800 Aligning: Query: 4BW0_A:9-14 Target: 1HMH_A:104-114 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |*|**| CGAAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 2AW7_A:158-163 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** GGAAAC struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 15.400 Aligning: Query: 4BW0_A:9-14 Target: 4R0D_A:447-453 iso ..*.*.. edge ..s.h.. struc ..(.).. iso ..*..*. edge ..s..h. struc ..(..). C-GAAAG *|**| UGUAACG struc ..(..). edge ..s..h. iso ..*..*. struc ..(.).. edge ..s.h.. iso ..*.*.. Alignment Score: 18.200 Aligning: Query: 4BW0_A:9-14 Target: 1VX6_A:2513-2518 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG *|** UGAAAU struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*.. Alignment Score: 17.400 Aligning: Query: 4BW0_A:9-14 Target: 3KTW_C:209-214 iso .*.*.. edge .s.h.. struc .(.).. iso .*..*. edge .s..h. struc .(..). CGAAAG |* **| CGGAAG struc .(..). edge .s..h. iso .*..*. struc .(.).. edge .s.h.. iso .*.*..