Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 16.000


Aligning:
Query:	1S72_0:2298-2310
Target:	4A1B_1:2622-2634

iso	..**....**...
edge	..hw....wh...
struc	..((....))...

	CGAAAAGAUAUCG
	  **|  |** ||
	UUAAACCAUAACG

struc	..((....))...
edge	..hw....wh...
iso	..**....**...



Alignment Score: 6.800


Aligning:
Query:	1S72_0:2298-2310
Target:	1VX6_A:2972-2984

iso	...*....*....
edge	...w....w....
struc	...(....)....

	CGAAAAGAUAUCG
	  |*|   *| ||
	UUAAAUAUUAACG

struc	...(....)....
edge	...w....w....
iso	...*....*....



Alignment Score: 11.400


Aligning:
Query:	1S72_0:2298-2310
Target:	2QBG_B:2264-2276

iso	..*+....+*...
edge	..hw....wh...
struc	..((....))...

	CGAAAAGAUAUCG
	| *+|   +* ||
	CUAAAGAGUAACG

struc	..((....))...
edge	..hW....Wh...
iso	..*+....+*...



Alignment Score: 17.400


Aligning:
Query:	1S72_0:2298-2310
Target:	4QCN_A:2276-2288

iso	..**....**...
edge	..hw....wh...
struc	..((....))...

	CGAAAAGAUAUCG
	| **||| ** ||
	CUAAAAGGUAACG

struc	..((....))...
edge	..hw....wh...
iso	..**....**...



Alignment Score: 17.400


Aligning:
Query:	1S72_0:2298-2310
Target:	3U5H_5:2633-2645

iso	..**....**...
edge	..hw....wh...
struc	..((....))...

	CGAAAAGAUAUCG
	  **| ||** ||
	UUAAACGAUAACG

struc	..((....))...
edge	..hw....wh...
iso	..**....**...



Alignment Score: 21.600


Aligning:
Query:	1S72_0:2298-2310
Target:	1VW3_A:2290-2302

iso	.***....***..
edge	.shw....whh..
struc	.(((....)))..

	CGAAAAGAUAUCG
	 ***||  ***| 
	AGCAAAAGUAUCU

struc	.(((....)))..
edge	.shw....whh..
iso	.***....***..