Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 12.800


Aligning:
Query:	2QBG_B:1630-1636
Target:	4A1B_1:1886-1892

iso	.+.+...
edge	.s.h...
struc	.(.)...

iso	.*...*.
edge	.s...h.
struc	.(...).

	AGAGAAU
	 +|+ + 
	UUAGCAG

struc	.(...).
edge	.s...h.
iso	.*...*.

struc	.(.)...
edge	.s.h...
iso	.+.+...



Alignment Score: 16.800


Aligning:
Query:	2QBG_B:1630-1636
Target:	1S72_0:1705-1713

iso	..*.*....
edge	..s.h....
struc	..(.)....

iso	..*...*..
edge	..s...h..
struc	..(...)..

	A-GAGAAU-
	  * *|*  
	CGGCGAAAG

struc	..(...)..
edge	..s...h..
iso	..*...*..

struc	..(.)....
edge	..s.h....
iso	..*.*....



Alignment Score: 17.400


Aligning:
Query:	2QBG_B:1630-1636
Target:	1XJR_A:21-27

iso	.*.*...
edge	.s.h...
struc	.(.)...

iso	.*...*.
edge	.s...h.
struc	.(...).

	AGAGAAU
	 *|* * 
	GGAGUAC

struc	.(...).
edge	.s...h.
iso	.*...*.

struc	.(.)...
edge	.s.h...
iso	.*.*...



Alignment Score: 15.000


Aligning:
Query:	2QBG_B:1630-1636
Target:	1VW3_A:1581-1589

iso	..+.+....
edge	..s.h....
struc	..(.)....

iso	..*...*..
edge	..s...h..
struc	..(...)..

	-AGAGAAU-
	 |+|+|+| 
	UAGAGAAUA

struc	..(...)..
edge	..s...h..
iso	..*...*..

struc	..(.)....
edge	..s.w....
iso	..+.+....