Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 5.600


Aligning:
Query:	3DH3_F:2594-2599
Target:	2AW7_A:1134-1140

iso	...++..
edge	...ss..
struc	...()..

iso	.+..+..
edge	.s..w..
struc	.(..)..

	CGUGAG-
	 + ++| 
	GUCCGGC

struc	.(..)..
edge	.s..w..
iso	.+..+..

struc	...()..
edge	...ss..
iso	...++..



Alignment Score: 18.800


Aligning:
Query:	3DH3_F:2594-2599
Target:	3DH3_E:2594-2599

iso	...**.
edge	...ss.
struc	...().

iso	.*..*.
edge	.s..w.
struc	.(..).

	CGUGAG
	|*|**|
	CGUGAG

struc	.(..).
edge	.s..w.
iso	.*..*.

struc	...().
edge	...ss.
iso	...**.