Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 17.400


Aligning:
Query:	2QBG_B:1389-1398
Target:	3U5H_5:1599-1608

iso	.**.*.*...
edge	.ws.h.h...
struc	.((.).)...

	GUUAAUAUUC
	|**|* *|||
	GUUAAGAUUC

struc	.((.).)...
edge	.ws.h.h...
iso	.**.*.*...



Alignment Score: 16.000


Aligning:
Query:	2QBG_B:1389-1398
Target:	4IOA_X:1402-1411

iso	.**.*.*...
edge	.ws.h.h...
struc	.((.).)...

	GUUAAUAUUC
	|**|* *|||
	GUCAAGAUUC

struc	.((.).)...
edge	.ws.h.h...
iso	.**.*.*...



Alignment Score: 17.400


Aligning:
Query:	2QBG_B:1389-1398
Target:	1VX6_A:1742-1751

iso	.**.*.*...
edge	.ws.h.h...
struc	.((.).)...

	GUUAAUAUUC
	|** *|*|||
	GUUGAUAUUC

struc	.((.).)...
edge	.ws.h.h...
iso	.**.*.*...



Alignment Score: 18.800


Aligning:
Query:	2QBG_B:1389-1398
Target:	4QCN_A:1435-1444

iso	.**.*.*...
edge	.ws.h.h...
struc	.((.).)...

	GUUAAUAUUC
	|**|*|*|||
	GUUAAUAUUC

struc	.((.).)...
edge	.ws.h.h...
iso	.**.*.*...



Alignment Score: 18.800


Aligning:
Query:	2QBG_B:1389-1398
Target:	4A1B_1:1624-1633

iso	.**.*.*...
edge	.ws.h.h...
struc	.((.).)...

	GUUAAUAUUC
	|**|*|*|||
	GUUAAUAUUC

struc	.((.).)...
edge	.ws.h.h...
iso	.**.*.*...