Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 11.800


Aligning:
Query:	1J2B_C:954-962
Target:	1F7V_B:953-961

iso	.*...*...
edge	.w...h...
struc	.(...)...

	GUUCAAGUC
	|*|||*|||
	GUUCAAGUC

struc	.(...)...
edge	.w...h...
iso	.*...*...



Alignment Score: 11.800


Aligning:
Query:	1J2B_C:954-962
Target:	2NR0_E:53-61

iso	.*...*...
edge	.w...h...
struc	.(...)...

	GUUCAAGUC
	|*|||*|||
	GUUCAAGUC

struc	.(...)...
edge	.w...h...
iso	.*...*...



Alignment Score: 11.800


Aligning:
Query:	1J2B_C:954-962
Target:	1GAX_D:952-960

iso	.*...*...
edge	.w...h...
struc	.(...)...

	GUUCAAGUC
	|*|||*|||
	GUUCAAGUC

struc	.(...)...
edge	.w...h...
iso	.*...*...



Alignment Score: 11.800


Aligning:
Query:	1J2B_C:954-962
Target:	1FIR_A:53-61

iso	.*...*...
edge	.w...h...
struc	.(...)...

	GUUCAAGUC
	|*|||*|||
	GUUCAAGUC

struc	.(...)...
edge	.w...h...
iso	.*...*...



Alignment Score: 11.800


Aligning:
Query:	1J2B_C:954-962
Target:	2NRE_F:53-61

iso	.*...*...
edge	.w...h...
struc	.(...)...

	GUUCAAGUC
	|*|||*|||
	GUUCAAGUC

struc	.(...)...
edge	.w...h...
iso	.*...*...