Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 9.600


Aligning:
Query:	4QCN_A:2416-2425
Target:	2QBG_B:2404-2413

iso	.*......*.
edge	.s......h.
struc	.(......).

	CGUGUGGAAG
	 *  ||||*|
	UGAAUGGAAG

struc	.(......).
edge	.s......h.
iso	.*......*.



Alignment Score: 12.400


Aligning:
Query:	4QCN_A:2416-2425
Target:	4IOA_X:2383-2392

iso	.*......*.
edge	.s......h.
struc	.(......).

	CGUGUGGAAG
	|*||||||*|
	CGUGUGGAAG

struc	.(......).
edge	.s......h.
iso	.*......*.