Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 28.800


Aligning:
Query:	2BTE_E:12-23
Target:	4AQ7_B:12-23

iso	.*........*..
edge	.W........S..
struc	.(........)..

iso	.**......*.*.
edge	.sw......s.h.
struc	.((......).).

	GGAAUGGGUAGAC
	|**|| |||***|
	GGAAUCGGUAGAC

struc	.((......).).
edge	.sw......s.h.
iso	.**......*.*.

struc	.(........)..
edge	.W........S..
iso	.*........*..



Alignment Score: 30.200


Aligning:
Query:	2BTE_E:12-23
Target:	2BTE_B:12-23

iso	.*........*..
edge	.W........S..
struc	.(........)..

iso	.**......*.*.
edge	.sw......s.h.
struc	.((......).).

	GGAAUGGGUAGAC
	|**||||||***|
	GGAAUGGGUAGAC

struc	.((......).).
edge	.sw......s.h.
iso	.**......*.*.

struc	.(........)..
edge	.W........S..
iso	.*........*..