Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 15.600


Aligning:
Query:	2HW8_B:15-20
Target:	4AY2_C:8-13

iso	..+.+.
edge	..s.h.
struc	..(.).

iso	.*..*.
edge	.s..w.
struc	.(..).

	CUUCGG
	|++|+|
	CUUCGG

struc	.(..).
edge	.s..w.
iso	.*..*.

struc	..(.).
edge	..s.h.
iso	..+.+.



Alignment Score: 14.200


Aligning:
Query:	2HW8_B:15-20
Target:	1UN6_F:15-64

iso	..+.+.
edge	..s.h.
struc	..(.).

iso	.*..*.
edge	.s..w.
struc	.(..).

	CUUCGG
	|++|+|
	CUACGG

struc	.(..).
edge	.s..w.
iso	.*..*.

struc	..(.).
edge	..s.h.
iso	..+.+.



Alignment Score: 12.400


Aligning:
Query:	2HW8_B:15-20
Target:	4PDB_I:17-22

iso	..+.+.
edge	..s.h.
struc	..(.).

iso	.+..+.
edge	.s..w.
struc	.(..).

	CUUCGG
	|++|+|
	CUUCGG

struc	.(..).
edge	.w..w.
iso	.+..+.

struc	..(.).
edge	..s.h.
iso	..+.+.