Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 21.200


Aligning:
Query:	1VW3_A:3081-3096
Target:	3J7Y_A:3177-3192

iso	...........*..*.
edge	...........W..H.
struc	...........(..).

iso	.*.*+...+*.*....
edge	.w.hh...ww.h....
struc	.(.((...)).)....

	UUGAAUACAUAUUAAA
	 *|*+  |+* * |* 
	AUGAUAUCAUCUCAAC

struc	.(.((...)).)....
edge	.w.hh...ww.h....
iso	.*.*+...+*.*....

struc	...........(..).
edge	...........W..H.
iso	...........*..*.



Alignment Score: 22.600


Aligning:
Query:	1VW3_A:3081-3096
Target:	4V19_A:1513-1529

iso	...........*..*..
edge	...........W..H..
struc	...........(..)..

iso	.*.*+...+*.*.....
edge	.w.hh...ww.h.....
struc	.(.((...)).).....

	UUGAAUACAUAUUAAA-
	 *|*+|  +* *||*  
	AUGAUUUAAUCUUAACC

struc	.(.((...)).).....
edge	.w.hW...Ww.h.....
iso	.*.*+...+*.*.....

struc	...........(..)..
edge	...........W..H..
iso	...........*..*..



Alignment Score: 41.000


Aligning:
Query:	1VW3_A:3081-3096
Target:	1VX6_A:3494-3509

iso	...........*..*.
edge	...........W..H.
struc	...........(..).

iso	.*.........*....
edge	.w.........h....
struc	.(.........)....

iso	.*.*++.++*....*.
edge	.w.hhs.www....w.
struc	.(.(((.)))....).

	UUGAAUACAUAUUAAA
	 *|*++ ++* *||* 
	CUGAACGCCUCUUAAG

struc	.(.(((.)))....).
edge	.w.hhs.hww....w.
iso	.*.*++.++*....*.

struc	.(.........)....
edge	.w.........h....
iso	.*.........*....

struc	...........(..).
edge	...........W..H.
iso	...........*..*.