Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 11.600


Aligning:
Query:	1VX6_A:1452-1454_1301-1310
Target:	4IOA_X:1160-1162_1015-1024

iso	.*.........*..
edge	.W.........W..
struc	.(.........)..

	UUA.UGCCUAAAUA
	 *|.| |||||*| 
	CUA.UCCCUAAAUG

struc	.(.........)..
edge	.W.........W..
iso	.*.........*..



Alignment Score: 8.200


Aligning:
Query:	1VX6_A:1452-1454_1301-1310
Target:	4A1B_1:1351-1353_1200-1209

iso	.*.........*..
edge	.W.........W..
struc	.(.........)..

	UUA.UGCCUAAAUA
	|* . ||| ||*| 
	UUG.CGCCCAAAUG

struc	.(.........)..
edge	.W.........W..
iso	.*.........*..



Alignment Score: 11.400


Aligning:
Query:	1VX6_A:1301-1310_1452-1454
Target:	3U5H_5:1173-1182_1324-1326

iso	.......*....*.
edge	.......W....W.
struc	.......(....).

	UGCCUAAAUA.UUA
	||||  |*||.|*|
	UGCCGGAAUA.UUA

struc	.......(....).
edge	.......W....W.
iso	.......*....*.