Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 21.400


Aligning:
Query:	2AW7_A:387-390_371-376
Target:	3J7A_A:464-467_449-454

iso	..**.*.***.
edge	..Ws.s.hwW.
struc	..((.(.))).

	UGAU.ACAAUG
	 |**.*|*** 
	AGAG.CCAAUU

struc	..((.(.))).
edge	..Ws.s.hwW.
iso	..**.*.***.



Alignment Score: 23.200


Aligning:
Query:	2AW7_A:387-390_371-376
Target:	1FJG_A:387-390_371-376

iso	..**.*.***.
edge	..Ws.s.hwW.
struc	..((.(.))).

	UGAU.ACAAUG
	||**.*|***|
	UGAC.GCAAUG

struc	..((.(.))).
edge	..Ws.s.hwW.
iso	..**.*.***.



Alignment Score: 18.200


Aligning:
Query:	2AW7_A:387-390_371-376
Target:	4BPP_A:450-453_435-440

iso	..**.+.+**.
edge	..Ws.s.hwW.
struc	..((.(.))).

	UGAU.ACAAUG
	 |**.+|+** 
	GGAG.CCAAUC

struc	..((.(.))).
edge	..Ws.S.HwW.
iso	..**.+.+**.



Alignment Score: 17.200


Aligning:
Query:	2AW7_A:387-390_371-376
Target:	1VX6_B:21-27_52-57

iso	.....**.*.***.
edge	.....Ws.s.hwW.
struc	.....((.(.))).

	UG---AU.ACAAUG
	 |   **.* *** 
	GGAUACA.UUAAGC

struc	.....((.(.))).
edge	.....Ws.s.hwW.
iso	.....**.*.***.



Alignment Score: 17.200


Aligning:
Query:	2AW7_A:387-390_371-376
Target:	3U5H_7:21-27_53-58

iso	.....**.*.***.
edge	.....Ws.s.hwW.
struc	.....((.(.))).

	U---GAU.ACAAUG
	    |**.* *** 
	GAAAGCA.UUAAGC

struc	.....((.(.))).
edge	.....Ws.s.hwW.
iso	.....**.*.***.