Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 20.000


Aligning:
Query:	1VX6_A:1536-1543_1563-1567
Target:	4KQY_A:31-38_17-21

iso	.....*.....*..
edge	.....h.....s..
struc	.....(.....)..

iso	.....*+...+..*
edge	.....sh...s..s
struc	.....((...)..)

	UGUUGAAG.UGGAA
	 |  |*+|. +*|*
	CGACGAAG.CAGAG

struc	.....((...)..)
edge	.....sw...s..s
iso	.....*+...+..*

struc	.....(.....)..
edge	.....h.....s..
iso	.....*.....*..



Alignment Score: 16.200


Aligning:
Query:	1VX6_A:1536-1543_1563-1567
Target:	4IOA_X:96-103_80-84

iso	.....*.....*..
edge	.....h.....s..
struc	.....(.....)..

iso	.....*.......*
edge	.....s.......s
struc	.....(.......)

	UGUUGAAG.UGGAA
	  |||*  .  *|*
	CUUUGACU.ACGAG

struc	.....(.......)
edge	.....s.......s
iso	.....*.......*

struc	.....(.....)..
edge	.....h.....s..
iso	.....*.....*..



Alignment Score: 19.600


Aligning:
Query:	1VX6_A:1536-1543_1563-1567
Target:	4W21_5:2302-2309_2329-2333

iso	.....*.....*..
edge	.....h.....s..
struc	.....(.....)..

iso	.*..+......+*.
edge	.s..s......ww.
struc	.(..(......)).

	UGUUGAAG.UGGAA
	 *||++||.||+* 
	CCUUGAAG.UGGAG

struc	.(..(......)).
edge	.s..s......ww.
iso	.*..+......+*.

struc	.....(.....)..
edge	.....h.....s..
iso	.....*.....*..