Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 24.800


Aligning:
Query:	4GXY_A:139-146_82-86
Target:	4QCN_A:96-103_80-84

iso	....***...***.
edge	....shh...ssh.
struc	....(((...))).

	CGAGGAUC.GGGAG
	|| |***|.|***|
	CGUGGAUC.GGGAG

struc	....(((...))).
edge	....shh...ssh.
iso	....***...***.



Alignment Score: 19.000


Aligning:
Query:	4GXY_A:139-146_82-86
Target:	1FJG_A:699-706_684-688

iso	....*+*...*+*.
edge	....shh...ssh.
struc	....(((...))).

	CGAGGAUC.GGGAG
	||  *+* . *+*|
	CGCAGAUA.AGUAG

struc	....(((...))).
edge	....shh...swh.
iso	....*+*...*+*.



Alignment Score: 25.800


Aligning:
Query:	4GXY_A:139-146_82-86
Target:	2AW7_A:699-706_684-688

iso	....*.......*.
edge	....s.......h.
struc	....(.......).

iso	.*...+*...*+*.
edge	.s...hh...ssw.
struc	.(...((...))).

	CGAGGAUC.GGGAG
	|*  *+* . *+*|
	CGUAGAGA.UGUAG

struc	.(...((...))).
edge	.s...hh...sww.
iso	.*...+*...*+*.

struc	....(.......).
edge	....s.......h.
iso	....*.......*.