Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 19.000


Aligning:
Query:	2QBG_B:2865-2869_2847-2852
Target:	1S72_0:2888-2892_2864-2869

iso	...*...*....
edge	...h...s....
struc	...(...)....

iso	.+.+.....++.
edge	.h.s.....hh.
struc	.(.(.....)).

	UUGAG.UGUAAG
	|+ +|.|+|++|
	UUAAG.UGUGCG

struc	.(.(.....)).
edge	.H.s.....hH.
iso	.+.+.....++.

struc	...(...)....
edge	...h...s....
iso	...*...*....



Alignment Score: 23.800


Aligning:
Query:	2QBG_B:2847-2852_2865-2869
Target:	4IOA_X:2822-2827_2840-2844

iso	...*......*.
edge	...h......s.
struc	...(......).

iso	.*..*...*.*.
edge	.s..h...h.h.
struc	.(..(...).).

	UGUAAG.UUGAG
	|* **|.|* *|
	UGCACG.UUCAG

struc	.(..(...).).
edge	.s..h...h.h.
iso	.*..*...*.*.

struc	...(......).
edge	...h......s.
iso	...*......*.



Alignment Score: 27.600


Aligning:
Query:	2QBG_B:2865-2869_2847-2852
Target:	1VX6_A:3759-3763_3724-3729

iso	...*...*....
edge	...h...s....
struc	...(...)....

iso	.*.*.....**.
edge	.h.s.....hh.
struc	.(.(.....)).

	UUGAG.UGUAAG
	|*|*|.|*|** 
	UUGAG.UGUAAA

struc	.(.(.....)).
edge	.h.s.....hh.
iso	.*.*.....**.

struc	...(...)....
edge	...h...s....
iso	...*...*....



Alignment Score: 28.200


Aligning:
Query:	2QBG_B:2865-2869_2847-2852
Target:	3U5H_5:3367-3371_3332-3337

iso	...*...*....
edge	...h...s....
struc	...(...)....

iso	.*.*.....**.
edge	.h.s.....hh.
struc	.(.(.....)).

	UUGAG.UGUAAG
	 *|*|.|*|**|
	CUGAG.UGUAAG

struc	.(.(.....)).
edge	.h.s.....hh.
iso	.*.*.....**.

struc	...(...)....
edge	...h...s....
iso	...*...*....