Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 30.600


Aligning:
Query:	2AW7_A:528-536_515-521
Target:	3U5F_6:575-583_562-568

iso	...........*..*..
edge	...........s..w..
struc	...........(..)..

iso	.*...*.....*...*.
edge	.s...h.....w...h.
struc	.(...(.....)...).

	CGGUAAUAC.GUGCCAG
	|*|||*| |.|*||**|
	CGGUAAUUC.GUGCCAG

struc	.(...(.....)...).
edge	.s...h.....w...h.
iso	.*...*.....*...*.

struc	...........(..)..
edge	...........s..w..
iso	...........*..*..



Alignment Score: 43.200


Aligning:
Query:	2AW7_A:528-536_515-521
Target:	1FJG_A:528-536_515-521

iso	.....*.....*..**.
edge	.....w.....s..ww.
struc	.....(.....(..)).

iso	.*...*.....*...*.
edge	.s...h.....w...h.
struc	.(...(.....)...).

	CGGUAAUAC.GUGCCAG
	|*|||*|||.|*||**|
	CGGUAAUAC.GUGCCAG

struc	.(...(.....)...).
edge	.s...h.....w...h.
iso	.*...*.....*...*.

struc	.....(.....(..)).
edge	.....w.....s..ww.
iso	.....*.....*..**.



Alignment Score: 41.800


Aligning:
Query:	2AW7_A:528-536_515-521
Target:	3J7A_A:582-590_569-575

iso	.....*.....*..**.
edge	.....w.....s..ww.
struc	.....(.....(..)).

iso	.*...*.....*...*.
edge	.s...h.....w...h.
struc	.(...(.....)...).

	CGGUAAUAC.GUGCCAG
	|*|||*| |.|*||**|
	CGGUAAUUC.GUGCCAG

struc	.(...(.....)...).
edge	.s...h.....w...h.
iso	.*...*.....*...*.

struc	.....(.....(..)).
edge	.....w.....s..ww.
iso	.....*.....*..**.