Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 15.600


Aligning:
Query:	4QCN_A:1598-1602_1483-1486
Target:	4IOA_X:1567-1571_1451-1454

iso	.**....**.
edge	.sh....wh.
struc	.((....)).

	CGAAG.CUAG
	 ** |.|** 
	AAACG.CUAU

struc	.((....)).
edge	.sh....wh.
iso	.**....**.



Alignment Score: 17.800


Aligning:
Query:	4QCN_A:1483-1486_1598-1602
Target:	4QCN_A:381-384_304-308

iso	.**...**..
edge	.wh...sh..
struc	.((...))..

	CUAG.CGAAG
	 **|.|**| 
	AUAG.CGAAU

struc	.((...))..
edge	.wh...sh..
iso	.**...**..



Alignment Score: 17.800


Aligning:
Query:	4QCN_A:1483-1486_1598-1602
Target:	1LNG_B:223-226_192-198

iso	.**...**....
edge	.wh...sh....
struc	.((...))....

	CUAG.CGAAG--
	 **|.|**|   
	GUAG.CGAACCC

struc	.((...))....
edge	.wh...sh....
iso	.**...**....



Alignment Score: 19.000


Aligning:
Query:	4QCN_A:1483-1486_1598-1602
Target:	2QBG_B:1864-1867_1874-1878

iso	.**...**..
edge	.wh...sh..
struc	.((...))..

	CUAG.CGAAG
	 **|.|**||
	UUAG.CGAAG

struc	.((...))..
edge	.wh...sh..
iso	.**...**..