Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 17.000


Aligning:
Query:	1S72_0:2724-2728_2754-2758
Target:	4A1B_1:167-171_248-252

iso	.*.*...*.*.
edge	.s.h...s.h.
struc	.(.(...).).

	UGUAC.GGUAG
	|* * . *|* 
	UGAAA.UGUAA

struc	.(.(...).).
edge	.s.h...s.h.
iso	.*.*...*.*.



Alignment Score: 15.400


Aligning:
Query:	1S72_0:2754-2758_2724-2728
Target:	4QCN_A:1909-1913_1882-1886

iso	.*.*...*.*.
edge	.s.h...s.h.
struc	.(.(...).).

	GGUAG.UGUAC
	 * *|.|* * 
	CGAAG.UCAAG

struc	.(.(...).).
edge	.s.h...s.h.
iso	.*.*...*.*.



Alignment Score: 11.800


Aligning:
Query:	1S72_0:2724-2728_2754-2758
Target:	4A1B_1:3217-3221_3189-3193

iso	.*.*...*.*.
edge	.s.h...s.h.
struc	.(.(...).).

	UGUAC.GGUAG
	|* *|.|* *|
	UUAAC.GAGCG

struc	.(.(...).).
edge	.s.h...s.h.
iso	.*.*...*.*.