Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 8.200


Aligning:
Query:	1X8W_A:223-227_247-250
Target:	4GXY_A:76-80_148-153

iso	.*......*...
edge	.w......h...
struc	.(......)...

	CUAA-G.UA-UG
	 * | |. * | 
	GUGACG.GAGUC

struc	.(......)...
edge	.w......h...
iso	.*......*...



Alignment Score: 9.800


Aligning:
Query:	1X8W_A:247-250_223-227
Target:	4IOA_X:1431-1435_1593-1597

iso	..*....*...
edge	..h....w...
struc	..(....)...

	U-AUG.CUAAG
	| *||.|*|| 
	UGAUG.CUAAA

struc	..(....)...
edge	..h....w...
iso	..*....*...



Alignment Score: 9.400


Aligning:
Query:	1X8W_A:223-227_247-250
Target:	2QBG_B:1437-1440_1551-1555

iso	.*.....*..
edge	.w.....h..
struc	.(.....)..

	CUAAG.UAUG
	|*|  . *||
	CUAUA.AAUG

struc	.(.....)..
edge	.w.....h..
iso	.*.....*..



Alignment Score: 8.200


Aligning:
Query:	1X8W_A:223-227_247-250
Target:	4GMA_Z:86-90_153-158

iso	.*......*....
edge	.w......h....
struc	.(......)....

	CUAAG.U-AUG--
	 * ||.  * |  
	GUGAG.CGA-GCC

struc	.(......)....
edge	.w......h....
iso	.*......*....



Alignment Score: 9.000


Aligning:
Query:	1X8W_A:223-227_247-250
Target:	3Q1Q_C:44-48_32-35

iso	.*.....*..
edge	.w.....h..
struc	.(.....)..

	CUAAG.UAUG
	|*|||.|*||
	CUAAG.UAUG

struc	.(.....)..
edge	.w.....h..
iso	.*.....*..



Alignment Score: 7.600


Aligning:
Query:	1X8W_A:223-227_247-250
Target:	3KTW_C:224-227_193-199

iso	.*......*...
edge	.w......h...
struc	.(......)...

	CUAAG.U-AUG-
	 *  |.  *   
	GUGCG.GGAACC

struc	.(......)...
edge	.w......h...
iso	.*......*...