Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
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Alignment Score: 10.000


Aligning:
Query:	2QBG_A:30-31_51-54
Target:	4A1C_3:28-29_48-51

iso	.*...*.
edge	.S...W.
struc	.(...).

	CC.GAAG
	|*.||*|
	CC.GAAG

struc	.(...).
edge	.S...W.
iso	.*...*.



Alignment Score: 8.800


Aligning:
Query:	2QBG_A:51-54_30-31
Target:	3U5F_6:1760-1763_1639-1641

iso	..*...*.
edge	..W...S.
struc	..(...).

	GAAG.CC-
	| * .|* 
	GUAA.CCC

struc	..(...).
edge	..W...S.
iso	..*...*.



Alignment Score: 10.000


Aligning:
Query:	2QBG_A:30-31_51-54
Target:	1VX6_B:28-29_48-51

iso	.*...*.
edge	.S...W.
struc	.(...).

	CC.GAAG
	|*.||*|
	CC.GAAG

struc	.(...).
edge	.S...W.
iso	.*...*.