Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 8.200


Aligning:
Query:	4W21_5:4638-4640_4659-4661
Target:	4BPP_A:156-158_144-146

iso	.*...*.
edge	.H...W.
struc	.(...).

	UGC.GGG
	|* . * 
	UGG.CGA

struc	.(...).
edge	.H...W.
iso	.*...*.



Alignment Score: 9.400


Aligning:
Query:	4W21_5:4638-4640_4659-4661
Target:	1VX6_B:92-94_82-85

iso	.*...*..
edge	.H...W..
struc	.(...)..

	UGC.GG-G
	 *|.|* |
	CGC.GGUG

struc	.(...)..
edge	.H...W..
iso	.*...*..



Alignment Score: 8.800


Aligning:
Query:	4W21_5:4638-4640_4659-4661
Target:	4R0D_A:80-82_97-99

iso	.*...*.
edge	.H...W.
struc	.(...).

	UGC.GGG
	 * . *|
	CGU.AGG

struc	.(...).
edge	.H...W.
iso	.*...*.



Alignment Score: 8.200


Aligning:
Query:	4W21_5:4638-4640_4659-4661
Target:	3U5F_6:1290-1292_1323-1325

iso	.*...*.
edge	.H...W.
struc	.(...).

	UGC.GGG
	|* . * 
	UGG.CGA

struc	.(...).
edge	.H...W.
iso	.*...*.