Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 34.800


Aligning:
Query:	4IOA_X:871-876_925-931
Target:	1S72_0:952-957_1009-1015

iso	..*........*..
edge	..w........h..
struc	..(........)..

iso	.****....**...
edge	.SHhW....Ws...
struc	.()((....))...

	UGUAGA.UCCGAAG
	 ****|.||***| 
	GGUAGA.UCCAAAC

struc	.()((....))...
edge	.SHhW....Ws...
iso	.****....**...

struc	..(........)..
edge	..w........h..
iso	..*........*..



Alignment Score: 36.000


Aligning:
Query:	4IOA_X:871-876_925-931
Target:	2QBG_B:858-863_913-919

iso	..*........*..
edge	..w........h..
struc	..(........)..

iso	.****....**...
edge	.SHhW....Ws...
struc	.()((....))...

	UGUAGA.UCCGAAG
	 ****|.| ***| 
	GGUAGA.UGCGAAU

struc	.()((....))...
edge	.SHhW....Ws...
iso	.****....**...

struc	..(........)..
edge	..w........h..
iso	..*........*..



Alignment Score: 31.800


Aligning:
Query:	4IOA_X:871-876_925-931
Target:	4A1B_1:1019-1024_1076-1082

iso	..*........*..
edge	..w........h..
struc	..(........)..

iso	.****....**...
edge	.SHhW....Ws...
struc	.()((....))...

	UGUAGA.UCCGAAG
	 ****|.| ***| 
	GGUAAA.UUUAAAU

struc	.()((....))...
edge	.SHhW....Ws...
iso	.****....**...

struc	..(........)..
edge	..w........h..
iso	..*........*..



Alignment Score: 38.000


Aligning:
Query:	4IOA_X:871-876_925-931
Target:	4W21_5:1733-1738_1790-1796

iso	..*........*..
edge	..w........h..
struc	..(........)..

iso	.****..****...
edge	.SHhW..SHWs...
struc	.()((..()))...

	UGUAGA.UCCGAAG
	 ****|.*****| 
	GGUAAA.UUUAAAU

struc	.()((..()))...
edge	.SHhW..SHWs...
iso	.****..****...

struc	..(........)..
edge	..w........h..
iso	..*........*..



Alignment Score: 37.400


Aligning:
Query:	4IOA_X:871-876_925-931
Target:	4QCN_A:905-910_959-965

iso	..*........*..
edge	..w........h..
struc	..(........)..

iso	.****....**...
edge	.SHhW....Ws...
struc	.()((....))...

	UGUAGA.UCCGAAG
	|****|.||***||
	UGUAGA.UCCGAAG

struc	.()((....))...
edge	.SHhW....Ws...
iso	.****....**...

struc	..(........)..
edge	..w........h..
iso	..*........*..



Alignment Score: 34.200


Aligning:
Query:	4IOA_X:871-876_925-931
Target:	1VX6_A:1114-1120_1173-1180

iso	...*........*...
edge	...w........h...
struc	...(........)...

iso	..****....**....
edge	..SHhW....Ws....
struc	..()((....))....

	U-GUAGA.UCCGAAG-
	  ****|.||***|  
	AGGUAGA.UCCCAAUA

struc	..()((....))....
edge	..SHhW....Ws....
iso	..****....**....

struc	...(........)...
edge	...w........h...
iso	...*........*...