Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 16.200


Aligning:
Query:	2NZ4_S:96-102_119-126
Target:	1FJG_A:1285-1290_1247-1252

iso	...**.....**....
edge	...hh.....ww....
struc	...((.....))....

	UUAAAUC.GGACAAAG
	  |**  .| **||| 
	AAAAA--.GUACAAA-

struc	...((.....))....
edge	...hh.....ww....
iso	...**.....**....



Alignment Score: 22.600


Aligning:
Query:	2NZ4_S:96-102_119-126
Target:	2NZ4_R:96-102_119-126

iso	...**.....**....
edge	...hh.....ww....
struc	...((.....))....

	UUAAAUC.GGACAAAG
	|||**||.||**||||
	UUAAAUC.GGACAAAG

struc	...((.....))....
edge	...hh.....ww....
iso	...**.....**....