Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 8.200


Aligning:
Query:	3J7A_A:148-150_160-162
Target:	2IL9_M:6022-6024_6055-6057

iso	.*...*.
edge	.W...H.
struc	.(...).

	UAC.GUA
	 * . * 
	AAA.UUU

struc	.(...).
edge	.W...H.
iso	.*...*.



Alignment Score: 8.600


Aligning:
Query:	3J7A_A:148-150_160-162
Target:	4W23_2:454-456_437-439

iso	.*...*.
edge	.W...H.
struc	.(...).

	UAC.GUA
	|*|.|*|
	UAC.GGA

struc	.(...).
edge	.W...H.
iso	.*...*.



Alignment Score: 8.600


Aligning:
Query:	3J7A_A:148-150_160-162
Target:	3U5F_6:406-408_389-391

iso	.*...*.
edge	.W...H.
struc	.(...).

	UAC.GUA
	|*|.|*|
	UAC.GGA

struc	.(...).
edge	.W...H.
iso	.*...*.



Alignment Score: 8.200


Aligning:
Query:	3J7A_A:148-150_160-162
Target:	1VX6_A:444-446_701-703

iso	.*...*.
edge	.W...H.
struc	.(...).

	UAC.GUA
	 * . * 
	GAG.CUU

struc	.(...).
edge	.W...H.
iso	.*...*.



Alignment Score: 8.600


Aligning:
Query:	3J7A_A:148-150_160-162
Target:	4BPP_A:397-399_380-382

iso	.*...*.
edge	.W...H.
struc	.(...).

	UAC.GUA
	|*|.|*|
	UAC.GGA

struc	.(...).
edge	.W...H.
iso	.*...*.