Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 19.000


Aligning:
Query:	2A64_A:347-351_378-382
Target:	4IOA_X:1848-1852_1865-1869

iso	.**.....**.
edge	.ss.....hh.
struc	.((.....)).

	CGGAG.CGAAG
	 **||.||** 
	UGGAG.CGAAA

struc	.((.....)).
edge	.ss.....hh.
iso	.**.....**.



Alignment Score: 16.600


Aligning:
Query:	2A64_A:347-351_378-382
Target:	3J7A_A:1975-1979_2011-2015

iso	.**.....**.
edge	.ss.....hh.
struc	.((.....)).

	CGGAG.CGAAG
	 **| . |** 
	UGGAC.GGAAA

struc	.((.....)).
edge	.ss.....hh.
iso	.**.....**.



Alignment Score: 15.800


Aligning:
Query:	2A64_A:347-351_378-382
Target:	4A1B_1:764-769_751-755

iso	.**......**.
edge	.ss......hh.
struc	.((......)).

	CGG-AG.CGAAG
	 ** ||.| **|
	UAGCAG.CCAAG

struc	.((......)).
edge	.ss......hh.
iso	.**......**.



Alignment Score: 13.800


Aligning:
Query:	2A64_A:347-351_378-382
Target:	2AW7_A:1430-1435_1466-1470

iso	.**......**.
edge	.ss......hh.
struc	.((......)).

	CGGA-G.CGAAG
	 **| |.| ** 
	AAGAAG.CCACU

struc	.((......)).
edge	.ss......hh.
iso	.**......**.