Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 22.400


Aligning:
Query:	4QCN_A:1624-1628_1463-1467
Target:	1VW3_A:1364-1368_1397-1401

iso	........+.+
edge	........s.h
struc	........(.)

iso	.*.*...**..
edge	.w.h...sh..
struc	.(.(...))..

	CUAAG.CGAUG
	|+|* . *+|+
	CUAAU.AGAUG

struc	.(.(...))..
edge	.w.h...sh..
iso	.*.*...**..

struc	........(.)
edge	........s.h
iso	........+.+



Alignment Score: 23.600


Aligning:
Query:	4QCN_A:1624-1628_1463-1467
Target:	2QBG_B:1351-1355_1376-1380

iso	........+.+
edge	........s.h
struc	........(.)

iso	.*.*...**..
edge	.w.h...sh..
struc	.(.(...))..

	CUAAG.CGAUG
	|+|*|.|*+|+
	CUAAG.CGAUG

struc	.(.(...))..
edge	.w.h...sh..
iso	.*.*...**..

struc	........(.)
edge	........s.h
iso	........+.+



Alignment Score: 23.800


Aligning:
Query:	4QCN_A:1624-1628_1463-1467
Target:	4QCN_A:1397-1401_1422-1426

iso	........+.+
edge	........s.h
struc	........(.)

iso	.*.*...**..
edge	.w.h...sh..
struc	.(.(...))..

	CUAAG.CGAUG
	|+|*|.|*+ +
	CUAAG.CGAAG

struc	.(.(...))..
edge	.w.h...sh..
iso	.*.*...**..

struc	........(.)
edge	........s.h
iso	........+.+