Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 32.400


Aligning:
Query:	4IOA_X:2615-2619_2754-2762
Target:	4QCN_A:2648-2652_2787-2795

iso	...*...*.......
edge	...h...s.......
struc	...(...).......

iso	.**....***.*...
edge	.ws....whS.H...
struc	.((....))(.)...

	UUGAG.CAAGAUGAG
	|***|.|***|*|||
	UUGAG.CAAGAUGAG

struc	.((....))(.)...
edge	.ws....whS.H...
iso	.**....***.*...

struc	...(...).......
edge	...h...s.......
iso	...*...*.......



Alignment Score: 23.400


Aligning:
Query:	4IOA_X:2615-2619_2754-2762
Target:	2QBG_B:2636-2640_2774-2782

iso	........*.*....
edge	........s.s....
struc	........(.)....

iso	..**...*..*....
edge	..sh...s..h....
struc	..((...)..)....

	UUGAG.CAAGAUGAG
	 |**|.|**|*||||
	CUGAG.CGAGAUGAG

struc	..((...)..)....
edge	..sh...s..h....
iso	..**...*..*....

struc	........(.)....
edge	........s.s....
iso	........*.*....