Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 42.400


Aligning:
Query:	1VX6_A:974-980_952-957
Target:	4IOA_X:737-743_715-720

iso	..+.......+...
edge	..w.......s...
struc	..(.......)...

iso	.****....****.
edge	.sshW....Wshh.
struc	.((((....)))).

	UGGAGGA.UUGAAG
	 *++*||.|*++* 
	CGGAGGA.UUGAAA

struc	.((((....)))).
edge	.sshW....Wshh.
iso	.****....****.

struc	..(.......)...
edge	..w.......s...
iso	..+.......+...



Alignment Score: 41.800


Aligning:
Query:	1VX6_A:952-957_974-980
Target:	3U5H_5:833-838_855-861

iso	..+......+....
edge	..s......w....
struc	..(......)....

iso	.****...****..
edge	.Wshh...sshW..
struc	.((((...))))..

	UUGAAG.UGGAGGA
	 *++*|.|*++*| 
	GUGAAG.UGGAGGC

struc	.((((...))))..
edge	.Wshh...sshW..
iso	.****...****..

struc	..(......)....
edge	..s......w....
iso	..+......+....



Alignment Score: 41.800


Aligning:
Query:	1VX6_A:952-957_974-980
Target:	4QCN_A:749-754_771-777

iso	..+......+....
edge	..s......w....
struc	..(......)....

iso	.****...****..
edge	.Wshh...sshW..
struc	.((((...))))..

	UUGAAG.UGGAGGA
	 *++*|.|*++*| 
	GUGAAG.UGGAGGC

struc	.((((...))))..
edge	.Wshh...sshW..
iso	.****...****..

struc	..(......)....
edge	..s......w....
iso	..+......+....



Alignment Score: 40.400


Aligning:
Query:	1VX6_A:952-957_974-980
Target:	1S72_0:793-798_815-821

iso	..+......+....
edge	..s......w....
struc	..(......)....

iso	.+***...***+..
edge	.Wshh...sshW..
struc	.((((...))))..

	UUGAAG.UGGAGGA
	 +++*|.|*+++| 
	AUGAAG.UGGAAGU

struc	.((((...))))..
edge	.Wshh...sshW..
iso	.+***...***+..

struc	..(......)....
edge	..s......w....
iso	..+......+....