Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 27.000


Aligning:
Query:	1VW3_A:2902-2906_3112-3116
Target:	1GID_A:112-116_205-208

iso	.*......*..
edge	.w......s..
struc	.(......)..

iso	.**.....**.
edge	.sh.....sh.
struc	.((.....)).

	CAAAU.AUAAG
	 **| . |** 
	GAAAG.-UAAC

struc	.((.....)).
edge	.sh.....sh.
iso	.**.....**.

struc	.(......)..
edge	.w......s..
iso	.*......*..



Alignment Score: 14.800


Aligning:
Query:	1VW3_A:2902-2906_3112-3116
Target:	3U5F_6:1678-1682_1719-1723

iso	.*++...++*.
edge	.shw...wsh.
struc	.(((...))).

	CAAAU.AUAAG
	 *++|.|++* 
	AGGAU.AGAAU

struc	.(((...))).
edge	.ssw...shh.
iso	.*++...++*.



Alignment Score: 18.200


Aligning:
Query:	1VW3_A:2902-2906_3112-3116
Target:	4BPP_A:1672-1676_1649-1653

iso	.**+...+**.
edge	.shw...wsh.
struc	.(((...))).

	CAAAU.AUAAG
	 **+ . +** 
	GAAAA.UGGAC

struc	.(((...))).
edge	.shh...ssh.
iso	.**+...+**.