Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
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Alignment Score: 11.000


Aligning:
Query:	4QK9_A:29-33_99-103
Target:	4QK8_A:26-30_95-99

iso	.*.......*.
edge	.s.......h.
struc	.(.......).

	GGACC.CUAAC
	|*| |.|||*|
	GGAAC.CUAAC

struc	.(.......).
edge	.s.......h.
iso	.*.......*.



Alignment Score: 11.200


Aligning:
Query:	4QK9_A:99-103_29-33
Target:	2OIU_P:36-40_21-25

iso	...*...*...
edge	...h...s...
struc	...(...)...

	CUAAC.GGACC
	|| * . *|||
	CUUAG.CGACC

struc	...(...)...
edge	...h...s...
iso	...*...*...