Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 19.600


Aligning:
Query:	2GDI_Y:59-63_76-80
Target:	2HOJ_A:59-63_76-80

iso	.**....**..
edge	.Ww....wH..
struc	.((....))..

	UGAUC.GCGUA
	|**||.|**||
	UGAUC.GCGUA

struc	.((....))..
edge	.Ww....wH..
iso	.**....**..



Alignment Score: 17.000


Aligning:
Query:	2GDI_Y:59-63_76-80
Target:	3D2V_A:47-51_64-68

iso	.**....**..
edge	.Ww....wH..
struc	.((....))..

	UGAUC.GCGUA
	|** |.|** |
	UGAAC.GCGCA

struc	.((....))..
edge	.Ww....wH..
iso	.**....**..