Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 188.600


Aligning:
Query:	2QBG_B:116-121_130-131_148-150_176-178_47-54
Target:	4QCN_A:46-53_114-119_128-129_148-150_165-167

iso	.+......................+...................
edge	.s......................h...................
struc	.(......................)...................

	CGAAUG.CA.UAU.AGG.CGAUGAA------------------G
	|+    .  .   .   .      +                  |
	CG----.--.---.---.------AUGAAGCGAAUGCGCACGGG

struc	.(......................)...................
edge	.S......................W...................
iso	.+......................+...................



Alignment Score: 193.400


Aligning:
Query:	4QCN_A:114-119_128-129_148-150_165-167_46-53
Target:	4IOA_X:46-53_114-119_128-129_142-143_154-155

iso	.+......................+.................
edge	.s......................h.................
struc	.(......................).................

	CGAAUG.CG.CAC.GGG.CGAUGAA----------------G
	|+    .  .   .   .      +                |
	CG----.--.---.---.------AUGAAGCGAAUGCAUAUG

struc	.(......................).................
edge	.S......................W.................
iso	.+......................+.................



Alignment Score: 194.600


Aligning:
Query:	4QCN_A:114-119_128-129_148-150_165-167_46-53
Target:	1S72_0:43-50_111-116_124-132_146-148

iso	....................*......................*....
edge	....................s......................h....
struc	....................(......................)....

	--------C-----------GAAUG.CG.CAC.GGG.CGAUGAA--G-
	        |           *    .  .   .   .      *  | 
	UGAUGAAGCGAAUGCUCUAAC----.--.---.---.------AAUGA

struc	....................(......................)....
edge	....................s......................h....
iso	....................*......................*....