Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 90.400


Aligning:
Query:	1VX6_A:2028-2080_1772-1781_1790-1804
Target:	3U5H_5:1641-1649_1806-1816_1627-1632

iso	.*....................................................................
edge	.s....................................................................
struc	.(....................................................................

	GGGAACGGCUUUGUAACUUGGUUUCUUCUGAUUCCAUUUUGCUUUGCUUAUAC.GUUUCUUAGA.UAUAU
	 *                                                   .          .     
	UA---------------------------------------------------.----------.-----

struc	.(....................................................................
edge	.s....................................................................
iso	.*....................................................................

iso	........*.......................
edge	........h.......................
struc	........).......................

	AUAAAUGAAC----------------------
	        *|                      
	--------ACUGAAUAGGAAGGAAUAUCUUCA

struc	........).......................
edge	........h.......................
iso	........*.......................