Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 15.400


Aligning:
Query:	4A1B_1:1637-1640_1853-1855_1555-1557_1616-1620
Target:	4RGE_B:11-14_25-26_41-44

iso	...+.............+..
edge	...S.............S..
struc	...(.............)..

	AA-GC.GUU.AUC.GGAA-U
	|  + .|  .|| .   + |
	AGCC-.G--.AU-.---AAU

struc	...(.............)..
edge	...s.............s..
iso	...+.............+..



Alignment Score: 13.200


Aligning:
Query:	4A1B_1:1637-1640_1853-1855_1555-1557_1616-1620
Target:	1VX6_A:1679-1680_1734-1738_1755-1758_2096-2097

iso	....+.............+..
edge	....S.............S..
struc	....(.............)..

	AA--GC.GUU.AUC.GGAAU-
	    + .   .|| . | +  
	UCGGAA.---.AU-.-GCCGA

struc	....(.............)..
edge	....s.............s..
iso	....+.............+..



Alignment Score: 13.200


Aligning:
Query:	4A1B_1:1637-1640_1853-1855_1555-1557_1616-1620
Target:	1S72_0:1453-1455_1490-1494_1511-1514_1672-1674

iso	.....+.............+...
edge	.....S.............S...
struc	.....(.............)...

	AA---GC.GUU.AUC.GGAA-U-
	     + .   .|| . | + | 
	GUCGGAA.---.AU-.-GCCGUC

struc	.....(.............)...
edge	.....s.............s...
iso	.....+.............+...