Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 64.000


Aligning:
Query:	2AW7_A:955-962_973-984_1221-1225
Target:	4W23_2:1516-1520_1237-1244_1255-1266

iso	......**.**............+.................+..
edge	......ws.hw............W.................S..
struc	......((.))............(.................)..

	---U--UUAAU------------UC.GAAGAACCUUAC.GGCUA
	   |  **|**            + .            .  +  
	GGCUGCUUAAUUUGGGAAACCUCA-.------------.--C--

struc	......((.))............(.................)..
edge	......ws.hw............S.................H..
iso	......**.**............+.................+..



Alignment Score: 57.000


Aligning:
Query:	4BPP_A:1425-1429_1152-1159_1170-1181
Target:	4W23_2:1237-1244_1255-1266_1516-1520

iso	..................+......................+.....
edge	..................w......................w.....
struc	..................(......................).....

	--------G---------GCCG.CUUAAUUU.GGGGAAACUCA-C--
	        |         +   .        .         +  |  
	CUUAAUUUGGGAAACCUCA---.--------.---------CGGCUG

struc	..................(......................).....
edge	..................S......................H.....
iso	..................+......................+.....



Alignment Score: 54.800


Aligning:
Query:	1FJG_A:1223-1225_955-962_973-982
Target:	4W23_2:1237-1244_1255-1266_1516-1520

iso	..................+....................+.....
edge	..................W....................W.....
struc	..................(....................).....

	------------------CGA.UUUAAUUC.GAAGAACCU---U-
	                  +  .        .        +   | 
	CUUAAUUUGGGAAACCUCA--.--------.--------CGGCUG

struc	..................(....................).....
edge	..................S....................H.....
iso	..................+....................+.....