Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 28.400


Aligning:
Query:	3V7E_D:208-215_240-242_292-301_314-318
Target:	4B5R_A:8-15_40-42_60-69_82-86

iso	.....*....*......*.........*.
edge	.....W....W......W.........W.
struc	.....(....)......(.........).

	CAAGAGAG.CCG.CAAUUCCUGC.GAAAG
	|||||*||.|*|.||||*|||||.|||*|
	CAAGAGAG.CCG.CAAUUCCUGC.GAAAG

struc	.....(....)......(.........).
edge	.....W....W......W.........W.
iso	.....*....*......*.........*.



Alignment Score: 23.600


Aligning:
Query:	4KQY_A:40-43_81-90_106-110_8-15
Target:	3V7E_D:208-215_240-242_292-301_314-318

iso	.....*........................*................
edge	.....W........................W................
struc	.....(........................)................

	UU---CA.UAAAUCCAGC.GGAAG.CAAGAG--AA------------
	     *|.        ||.     .     *  ||            
	CAAGAGA.--------GC.-----.-----CGCAAUUCCUGCGAAAG

struc	.....(........................)................
edge	.....W........................W................
iso	.....*........................*................



Alignment Score: 28.400


Aligning:
Query:	3V7E_D:208-215_240-242_292-301_314-318
Target:	4AOB_A:8-15_40-42_60-69_82-86

iso	.....*....*......*.........*.
edge	.....W....W......W.........W.
struc	.....(....)......(.........).

	CAAGAGAG.CCG.CAAUUCCUGC.GAAAG
	|||||*||.|*|.||||*|||||.|||*|
	CAAGAGAG.CCG.CAAUUCCUGC.GAAAG

struc	.....(....)......(.........).
edge	.....W....W......W.........W.
iso	.....*....*......*.........*.



Alignment Score: 28.400


Aligning:
Query:	3V7E_D:208-215_240-242_292-301_314-318
Target:	3GX5_A:8-15_40-42_60-69_82-86

iso	.....*....*......*.........*.
edge	.....W....W......W.........W.
struc	.....(....)......(.........).

	CAAGAGAG.CCG.CAAUUCCUGC.GAAAG
	|||||*||.|*|.||||*|||||.|||*|
	CAAGAGAG.CCG.CAAUUCCUGC.GAAAG

struc	.....(....)......(.........).
edge	.....W....W......W.........W.
iso	.....*....*......*.........*.