Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 22.600


Aligning:
Query:	3OWZ_B:74-82_7-14_27-29
Target:	3P49_A:146-154_84-91_105-107

iso	.....*.*...*.*.+....+.
edge	.....w.h...s.w.W....W.
struc	.....(.(...).).(....).

	CAAAAGGAC.GGAGAGAA.UCG
	 ||||*|*|.|*|*|+  . + 
	UAAAAGGAC.GGAGAGCU.ACA

struc	.....(.(...).).(....).
edge	.....w.h...s.w.w....w.
iso	.....*.*...*.*.+....+.



Alignment Score: 40.000


Aligning:
Query:	3OWZ_B:7-14_27-29_74-82
Target:	3OWZ_A:7-14_27-29_74-82

iso	.***.*....*.......***.
edge	.shw.W....W.......wsh.
struc	.(((.(....).......))).

	GGAGAGAA.UCG.CAAAAGGAC
	|***|*||.|*|.|||||***|
	GGAGAGAA.UCG.CAAAAGGAC

struc	.(((.(....).......))).
edge	.shw.W....W.......wsh.
iso	.***.*....*.......***.



Alignment Score: 18.800


Aligning:
Query:	3OWZ_B:27-29_74-82_7-14
Target:	3P49_A:30-32_55-64_8-15

iso	.*..........*...*...*..
edge	.W..........h...s...W..
struc	.(..........(...)...)..

	UCG.CAAAA-GGAC.GGAGAGAA
	 * . |||| ||*|.|*|||*| 
	ACA.UAAAAAGGAC.GGAGAGAU

struc	.(..........(...)...)..
edge	.W..........h...s...W..
iso	.*..........*...*...*..