Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 54.400


Aligning:
Query:	1VX6_A:2930-2936_2725-2728_2821-2825
Target:	4A1B_1:2580-2585_2428-2430_2507-2511

iso	...........*..............*.
edge	...........s..............h.
struc	...........(..............).

	A----------GACAUA.UUUG.CUUAU
	|          *     .    .   *|
	AGACAUUUGCUU-----.----.---AU

struc	...........(..............).
edge	...........s..............h.
iso	...........*..............*.



Alignment Score: 55.200


Aligning:
Query:	1VW3_A:2249-2254_1993-1995_2091-2095
Target:	4A1B_1:2580-2585_2428-2430_2507-2511

iso	...........*............*.
edge	...........s............h.
struc	...........(............).

	A----------GACAA.UCG.CUAAU
	|          *    .   .   *|
	AGACAUUUGCUU----.---.---AU

struc	...........(............).
edge	...........s............h.
iso	...........*............*.



Alignment Score: 56.200


Aligning:
Query:	3U5H_5:2590-2596_2433-2435_2512-2517
Target:	4A1B_1:2428-2430_2507-2511_2580-2585

iso	.....*............*.......
edge	.....s............h.......
struc	.....(............).......

	AA---GACAU.UUG.CUUAU-----U
	     *    .   .   *|     |
	UUGCUU----.---.---AUAGACAU

struc	.....(............).......
edge	.....s............h.......
iso	.....*............*.......