Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 63.200


Aligning:
Query:	4IOA_X:1621-1627_1636-1638_1319-1322
Target:	1S72_0:1412-1415_1680-1686_1695-1697

iso	.....+..........+.......
edge	.....w..........w.......
struc	.....(..........).......

iso	..+..+..................
edge	..s..w..................
struc	..(..)..................

iso	..+.............+.......
edge	..s.............h.......
struc	..(.............).......

	C-G-CAAAC.GUG.CAAG------
	  + |+   .   .  +|      
	UAAGCG---.---.--AGAACGUG

struc	..(.............).......
edge	..w.............w.......
iso	..+.............+.......

struc	..(..)..................
edge	..h..s..................
iso	..+..+..................

struc	.....(..........).......
edge	.....s..........w.......
iso	.....+..........+.......



Alignment Score: 52.000


Aligning:
Query:	1VX6_A:2104-2110_2119-2121_1637-1640
Target:	1S72_0:1680-1686_1695-1697_1412-1415

iso	.+............+...........
edge	.s............h...........
struc	.(............)...........

	CAACAAC.GUC.GAAG----------
	|+     .   .  +|          
	CG-----.---.--AGAACGUGUAAG

struc	.(............)...........
edge	.s............w...........
iso	.+............+...........



Alignment Score: 53.400


Aligning:
Query:	3U5H_5:1837-1843_1852-1854_1488-1491
Target:	1S72_0:1680-1686_1695-1697_1412-1415

iso	.+............+...........
edge	.s............h...........
struc	.(............)...........

	UGAUAAC.GUC.GAA-A---------
	 +     .   .  + |         
	CG-----.---.--AGAACGUGUAAG

struc	.(............)...........
edge	.s............w...........
iso	.+............+...........



Alignment Score: 52.000


Aligning:
Query:	4A1B_1:1861-1867_1876-1878_1514-1517
Target:	1S72_0:1680-1686_1695-1697_1412-1415

iso	.+............+...........
edge	.s............h...........
struc	.(............)...........

	CCAUAAC.GUC.GAAG----------
	|+     .   .  +|          
	CG-----.---.--AGAACGUGUAAG

struc	.(............)...........
edge	.s............w...........
iso	.+............+...........



Alignment Score: 53.400


Aligning:
Query:	4QCN_A:1651-1657_1666-1668_1352-1355
Target:	1S72_0:1680-1686_1695-1697_1412-1415

iso	.+............+...........
edge	.s............h...........
struc	.(............)...........

	CGCAAAC.GUG.CAAG----------
	|+     .   .  +|          
	CG-----.---.--AGAACGUGUAAG

struc	.(............)...........
edge	.s............w...........
iso	.+............+...........



Alignment Score: 53.400


Aligning:
Query:	1VW3_A:1557-1563_1572-1574_1337-1340
Target:	1S72_0:1680-1686_1695-1697_1412-1415

iso	.+............+...........
edge	.s............h...........
struc	.(............)...........

	UGUAGAC.GUA.UAAG----------
	 +     .   .  +|          
	CG-----.---.--AGAACGUGUAAG

struc	.(............)...........
edge	.s............w...........
iso	.+............+...........



Alignment Score: 52.000


Aligning:
Query:	2QBG_B:1605-1611_1620-1622_1306-1309
Target:	1S72_0:1680-1686_1695-1697_1412-1415

iso	.+............+...........
edge	.s............h...........
struc	.(............)...........

	CCCAAAC.GUG.CAAG----------
	|+     .   .  +|          
	CG-----.---.--AGAACGUGUAAG

struc	.(............)...........
edge	.s............w...........
iso	.+............+...........



Alignment Score: 53.000


Aligning:
Query:	4QCN_A:1344-1349_1671-1673_1686-1689
Target:	1S72_0:1680-1686_1695-1697_1412-1415

iso	.+...........+...........
edge	.s...........h...........
struc	.(...........)...........

	CGUAAG.CGG.UCAG----------
	|+    .   .  +|          
	CG----.---.--AGAACGUGUAAG

struc	.(...........)...........
edge	.s...........w...........
iso	.+...........+...........



Alignment Score: 57.600


Aligning:
Query:	4WFL_A:60-67_100-102_10-14
Target:	1S72_0:1680-1686_1695-1697_1412-1415

iso	.+..............+...........
edge	.w..............w...........
struc	.(..............)...........

	CCGAAUCC.GUG.CUAAG----------
	|+      .   .   +|          
	CG------.---.---AGAACGUGUAAG

struc	.(..............)...........
edge	.s..............w...........
iso	.+..............+...........



Alignment Score: 58.200


Aligning:
Query:	4IOA_X:1311-1316_1641-1643_1656-1659
Target:	1S72_0:1412-1415_1680-1686_1695-1697

iso	.....+.........+.......
edge	.....h.........w.......
struc	.....(.........).......

iso	..+..+.................
edge	..s..h.................
struc	..(..).................

iso	..+............+.......
edge	..s............h.......
struc	..(............).......

	C-GU-AAG.CGA.UAAG------
	  +  +  .   .  +|      
	UAAGCG--.---.--AGAACGUG

struc	..(............).......
edge	..w............w.......
iso	..+............+.......

struc	..(..).................
edge	..h..s.................
iso	..+..+.................

struc	.....(.........).......
edge	.....s.........w.......
iso	.....+.........+.......