Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 178.200


Aligning:
Query:	1VW3_A:483-488_577-580_700-703_1229-1232_1280-1289
Target:	4W21_5:1335-1341_1515-1519_1658-1661_2288-2294_2340-2351

iso	..............................+...........................+...
edge	..............................s...........................h...
struc	..............................(...........................)...

	-----------------------------CAAGUA.UGAC.GUUU.ACAU.AUAGAGAA-UG
	                             |+    .    .    .    .       + | 
	GGAGUCUAGGACGUUCGCCGCUGCAGGUGCA----.----.----.----.-------GAUC

struc	..............................(...........................)...
edge	..............................s...........................h...
iso	..............................+...........................+...



Alignment Score: 198.600


Aligning:
Query:	3J7Y_A:2290-2300_1865-1875_1899-1903_2019-2022_2271-2275
Target:	4W21_5:1335-1341_1515-1519_1658-1661_2288-2294_2340-2351

iso	..............................+....................................+..
edge	..............................W....................................H..
struc	..............................(....................................)..

	--A---------------------------AGAACUAAUG.CUAGAAAUAAC.GACCC.GUUG.CCAA-U
	  |                           +         .           .     .    .   + |
	GGAGUCUAGGACGUUCGCCGCUGCAGGUGCA---------.-----------.-----.----.---GAU

struc	..............................(....................................)..
edge	..............................s....................................h..
iso	..............................+....................................+..

iso	.
edge	.
struc	.

	-
	 
	C

struc	.
edge	.
iso	.