Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
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Alignment Score: 30.200


Aligning:
Query:	1VX6_A:2479-2483_2610-2615_2423-2427_2439-2443
Target:	1VW3_A:1695-1699_1735-1738_1876-1879_1679-1683

iso	...........+....................+...
edge	...........s....................h...
struc	...........(....................)...

	-----U-----GAUU.AUUAAC.GACUG.CAUA--G
	     |     +  |.|     .     .   +  |
	CACCGUGAAUAA--U.A-----.-----.---ACUG

struc	...........(....................)...
edge	...........w....................s...
iso	...........+....................+...



Alignment Score: 32.000


Aligning:
Query:	1VX6_A:2423-2427_2439-2443_2479-2483_2610-2615
Target:	1S72_0:1828-1832_1844-1848_1883-1886_2016-2020

iso	.*...................*..
edge	.s...................w..
struc	.(...................)..

iso	.*.......*...*.+....+.*.
edge	.s.......h...s.W....W.w.
struc	.(.......(...).(....).).

	GACUG.CAUAG.UGAUU.AUUAAC
	|*|||.|||*|.|* + .||+**|
	GACUG.CAUAG.UG-A-.AUUAAC

struc	.(.......(...).(....).).
edge	.s.......h...s.h....w.w.
iso	.*.......*...*.+....+.*.

struc	.(...................)..
edge	.s...................w..
iso	.*...................*..