Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
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Alignment Score: 12.400


Aligning:
Query:	1S72_0:2905-2910_2830-2832_2848-2853
Target:	4QCN_A:2892-2896_2824-2825_2841-2846

iso	.*............*..
edge	.h............s..
struc	.(............)..

	AACAGA.UCC.GUCGAU
	|*  | . ||.|| *||
	AAUCG-.-CC.GUGGAU

struc	.(............)..
edge	.h............s..
iso	.*............*..



Alignment Score: 13.400


Aligning:
Query:	1S72_0:2905-2910_2830-2832_2848-2853
Target:	2QBG_B:2882-2887_2813-2815_2831-2836

iso	.*............*..
edge	.h............s..
struc	.(............)..

	AACAGA.UCC.GUCGAU
	|*   |.  |.|| *||
	AAUGAA.AAC.GUUGAU

struc	.(............)..
edge	.h............s..
iso	.*............*..