Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 127.800


Aligning:
Query:	1VW3_A:399-404_66-71_91-95_381-392
Target:	4QCN_A:32-35_471-487_494-499

iso	.................+............................+........
edge	.................s............................h........
struc	.................(............................)........

	---G-------------GAAAG.UAAUAA.UAUAA.UAUAGUAAGUA-C------
	   |             +    .      .     .          + |      
	CUCGCGAUAGCGCACCAG----.------.-----.----------UACGGAAAG

struc	.................(............................)........
edge	.................S............................H........
iso	.................+............................+........



Alignment Score: 127.800


Aligning:
Query:	1VW3_A:399-404_66-71_91-95_381-392
Target:	4IOA_X:32-35_457-472_479-484

iso	................+............................+........
edge	................s............................h........
struc	................(............................)........

	---G------------GAAAG.UAAUAA.UAUAA.UAUAGUAAGUA-C------
	   |            +    .      .     .          + |      
	CCUGCGAUAGCGCAUAG----.------.-----.----------UACGGAAAG

struc	................(............................)........
edge	................S............................H........
iso	................+............................+........



Alignment Score: 127.800


Aligning:
Query:	1VW3_A:399-404_66-71_91-95_381-392
Target:	2QBG_B:32-35_445-461_468-473

iso	.................+............................+........
edge	.................s............................h........
struc	.................(............................)........

	---G-------------GAAAG.UAAUAA.UAUAA.UAUAGUAAGUA-C------
	   |             +    .      .     .          + |      
	CCUGCGAUAGUGAACCAG----.------.-----.----------UACGGAAAG

struc	.................(............................)........
edge	.................S............................H........
iso	.................+............................+........



Alignment Score: 127.800


Aligning:
Query:	1VW3_A:399-404_66-71_91-95_381-392
Target:	1S72_0:29-32_451-467_474-479

iso	.................+............................+........
edge	.................s............................h........
struc	.................(............................)........

	---G-------------GAAAG.UAAUAA.UAUAA.UAUAGUAAGUA--C-----
	   |             +    .      .     .          +  |     
	CUCGCGAUAGUGAACAAG----.------.-----.----------UAGCGAACG

struc	.................(............................)........
edge	.................S............................H........
iso	.................+............................+........