Alignment represention:
-> The line labled 'iso' is the isostericity base-pair indication. A Star '*' represents the matched location in the seqeunce is a of part a matched isosteric base-pair.A plus symbol '+' represents the matched location is a part of matched non-isosteric base-pair.
-> The line labeled 'edge' is the interacting edges. 'W' is for Watson-Crick, 'H' is for Hoogsteen, and 'S' is for sugar edge.Upper case letters are for 'cis' orientation base-pairs while lower case letters are for 'trans' orientation base-pairs.
-> The line labeled 'struc' represents the base-pair locations. A pair of '(' and ')' represent the base-pair that was identified in the first stage,while '<' and '>' represent the base-pair that was identified in the second stage.
-> A dot in the sequence represents the breakage location of the original sequence due to presentation of multiple strands in the query motif.An '-' symbol represents a gap in the sequence.
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


Alignment Score: 28.600


Aligning:
Query:	4TZX_X:72-75_21-25_45-54
Target:	3FO4_A:72-75_21-25_45-54

iso	............*......*.
edge	............W......W.
struc	............(......).

iso	.......*....**...*...
edge	.......w....sw...h...
struc	.......(....)(...)...

	GAUU.AUAAU.AGUUUCUACC
	||||.||*||.|**|||*|*|
	GAUU.AUAAU.AGUUUCUACC

struc	.......(....)(...)...
edge	.......w....sw...h...
iso	.......*....**...*...

struc	............(......).
edge	............W......W.
iso	............*......*.



Alignment Score: 17.800


Aligning:
Query:	4TZX_X:72-75_21-25_45-54
Target:	3LA5_A:72-75_21-25_45-54

iso	............*......*.
edge	............W......W.
struc	............(......).

iso	.......*....*........
edge	.......w....s........
struc	.......(....)........

	GAUU.AUAAU.AGUUUCUACC
	|| |.||*||.|* ||| |*|
	GACU.AUAAU.AGCUUCCACC

struc	.......(....)........
edge	.......w....s........
iso	.......*....*........

struc	............(......).
edge	............W......W.
iso	............*......*.



Alignment Score: 22.600


Aligning:
Query:	4TZX_X:72-75_21-25_45-54
Target:	4LX6_A:72-75_21-25_45-54

iso	............*......*.
edge	............W......W.
struc	............(......).

iso	.......*....*+...+...
edge	.......w....sw...h...
struc	.......(....)(...)...

	GAUU.AUAAU.AGUUUCUACC
	|| |.||*||.|*+|||+|*|
	GACU.AUAAU.AGCUUCCACC

struc	.......(....)(...)...
edge	.......w....sw...h...
iso	.......*....*+...+...

struc	............(......).
edge	............W......W.
iso	............*......*.



Alignment Score: 17.400


Aligning:
Query:	3IVN_A:36-45_63-66_12-16
Target:	4TZX_X:21-25_45-54_72-75

iso	..+................+............
edge	..s................w............
struc	..(................)............

	G-GUGUCUACC.GACU.AUA-----AC-----
	  +     |  .   |.| +     ||     
	AUA-----A--.---U.A-GUUUCUACCGAUU

struc	..(................)............
edge	..w................s............
iso	..+................+............



Alignment Score: 28.600


Aligning:
Query:	4TZX_X:72-75_21-25_45-54
Target:	1Y26_X:72-75_21-25_45-54

iso	............*......*.
edge	............W......W.
struc	............(......).

iso	.......*....**...*...
edge	.......w....sw...h...
struc	.......(....)(...)...

	GAUU.AUAAU.AGUUUCUACC
	||||.||*||.|**|||*|*|
	GAUU.AUAAU.AGUUUCUACC

struc	.......(....)(...)...
edge	.......w....sw...h...
iso	.......*....**...*...

struc	............(......).
edge	............W......W.
iso	............*......*.



Alignment Score: 26.800


Aligning:
Query:	4TZX_X:72-75_21-25_45-54
Target:	3RKF_A:72-75_21-25_45-54

iso	............*......*.
edge	............W......W.
struc	............(......).

iso	.......*....**.*.....
edge	.......w....sw.s.....
struc	.......(....)(.).....

	GAUU.AUAAU.AGUUUCUACC
	|| |.||*| . **|*|||*|
	GACU.AUAAC.GGUUUCUACC

struc	.......(....)(.).....
edge	.......w....sw.s.....
iso	.......*....**.*.....

struc	............(......).
edge	............W......W.
iso	............*......*.