STAR3D
STAR3D is a program for the alignment of RNA 3D structures.
PLATFORM
Linux
ENVIRONMENT
Java 1.7
DESCRIPTION
USAGE: java -jar STAR3D.jar [PDB1 ID] [chain1 ID] [PDB2 ID] [chain2 ID]
- -e : Gap extension penalty
- -g : Gap open penalty
- -i : Mismatch score
- -m : Match score
- -o : Output alignment file
- -p : Output alignment PDB or not
- -r : RMSD cutoff
- -s : Minimum stack size
- -t : Number of threads
- -h : help information
Preprocess (Linux): java -cp STAR3D.jar Preprocess [PDB ID] [chain ID]
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CONTACT US
Please contact Shaojie Zhang if you have any suggestions.