Ardalan Naseri, Degui Zhi, Shaojie Zhang
1. Installation
The source code (in C++) can be downloaded from here. To compile the code go to the directory Release and type: make
2. Usage information
Usage: ./M-PBWT <option(s)>
Options:
-i <INPUT FILE> Input file path in MACS format
-t <NUMBER OF ALLELES> Total number of possible alleles in the panel (< 11)
-m <NUMBER OF HAPLOTYPES> Number of haplotypes in the panel
-n <NUMBER OF SITES> Number of variant sites in the panel
-s Find all set max matches
-l <LENGTH> Find all matches larger than L variant sites
Required:
<INPUT FILE> <NUMBER OF ALLELES> <NUMBER OF SITES> <NUMBER OF HAPLOTYPES>
<LENGTH> required if you are looking for long matches.
For Commercial Use inquiries, please contact the authors below: Authors: Ardalan Naseri, Shaojie Zhang shzhang@cs.ucf.edu, Degui Zhi Degui.Zhi@uth.tmc.edu.